I forgot about the subwoofer.
I do a manual set-up for the sub. Laging mali ang auto set-up for the sub, e.
1) Setting the correct "acoustic" distance. Some speakers (and this is very common with subwoofers) have electronics which cause a delay in the sound. A good room correction tech should detect this and compensate for it by setting a longer distance for the speaker.
that is why in audyssey's case, it sets my sub at 16ft, more or less 2x my right fs' distance of 7.5ft
yes the bass is always the hardest to calibrate. but rule of thumb is:
settings at sub's plate amp before calibration
1. set phase to 0
2. crossover to highest setting 120hz-up
3. set sub's gain knob to 12'o clock (initially)
after the calibration, if the sub's sound level on the receiver's menu is +/- 3db, then you are good. if its outside of that range, adjust the sub's gain knob to compensate for the difference. if its -db then lower the knob (maybe 9'o clock) if its +db then add the gain (maybe 3' o clock). recalibrate until the receiver's menu for sub level is within the +/-3db range.
usually if you have calibrate it to such, many will find the bass to thin for their taste, so you now adjust the the gain of the sub on the receiver's level menu (not the sub's gain knob). personally i run my sub to +3-5db higher or they call it +3db hot.